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ITTC Bioinformatics Cluster

Note: FAQ Database is still being populated.

FAQs

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FAQs ordered by type
Login (FAQs: 3) FAQs and Howtos on how to login into systems.
File Transfer (FAQs: 1) FAQs and Howtos for using transferring files to and from the cluster.
Compiling (FAQs: 3) FAQs and Howtos on general questions compiling both serial and parallel programs.
Job Submission / Queuing (FAQs: 6) FAQs and Howtos for submitting a job to the Queue.
Job Monitoring (FAQs: 4) FAQs and Howtos for monitoring and tracking a job's status after submission.
Cluster Status (FAQs: 1) FAQs and Howtos on how to check the status of the cluster. Note: this is different than monitoring your personal job.
Job Results (FAQs: 1) FAQs and Howtos for checking the location and results of your finished job.
Datasets (FAQs: 0) FAQs and Howtos on the datasets available and how to access them.
Software Vocabulary (FAQs: 3) FAQs and Howtos describing the software.
Bioinformatics Application (FAQs: 3) FAQs and Howtos about running bioinformatics applications
General Software (FAQs: 1) Software that is not specific to any application. ie perl, java, python ...
Molecular Dynamics (FAQs: 6) Facts relating to Molecular Dynamics Software and Applications.
Using InfiniBand (FAQs: 5) FAQs and Howtos for compiling and running an MPI program using InfiniBand

FAQs ordered by Association
General (FAQs: 10)
biojava (FAQs: 1)
bioperl (FAQs: 1)
charmm (FAQs: 2)
GROMACS (FAQs: 3)
java (FAQs: 1)
MPICH2 (FAQs: 1)
MVAPICH2 (FAQs: 2)
namd (FAQs: 1)
NCBI Tool Kit (FAQs: 1)
PBSPro (FAQs: 14)